Hi Stefan, I have attached two files: one containing the console output and the other is the config.log. I hope this will help in finding the problem. Maurice and I are certainly willing to pay you a visit but still have not decided on the date for it. If this does not work remotely it could be a reason to plan a visit soon. Good Luck, Riham Stefan Manegold wrote:
Hi Riham,
hm, this looks really strange --- could you please sent me the output of your configure run for MonetDB (preferably both the console output and the produced config.log)?
Apparently, /usr/include/time.h does not define CLK_TCK ... ?
It looks like SuSE 10.2 is somehow "different" from former SuSE distribution as well as other Linux distributions, and I need to see more details to get any idea what might go wrong --- I cannot "guarantee" anything, though ...
We don't have (access to) any SuSE 10.x machine, yet (for testing, we only/still use SuSE 9.3 machines; cf. http://monetdb.cwi.nl/Development/TestWeb/Platforms/), but as far as I know, "people" have successfully compiled MonetDB on SuSE 10.0 & 10.1 ...
Stefan
ps: Are you using a laptop? If so, you might want to bring it to A'dam once you (and Maurice?) come to visit us (*hint*/*reminder* ;-)); then we could sort-out/solve the problems "life", in case we don't manage remotely...
On Mon, Oct 02, 2006 at 06:20:28PM +0200, Riham wrote:
HI Stefan,
You are right, I totally forgot I had to do this. Now I'm getting this error when I execute make for monetdb:
================================================================ kader@wlan139064:~/home/MonetDB_XQuery_CVS/build/MonetDB> make [..........] make[6]: Entering directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules/plain' make all-am make[7]: Entering directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules/plain' /bin/sh ../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../../../src/MonetDB/src/modules/plain -I../../.. -I../../../../../src/MonetDB/src/modules/plain -I../../common -I../../../../../src/MonetDB/src/modules/plain/../../common -I../../gdk -I../../../../../src/MonetDB/src/modules/plain/../../gdk -I../../monet -I../../../../../src/MonetDB/src/modules/plain/../../monet -DLIBSYS -g -O2 -std=c99 -Wall -W -Werror-implicit-function-declaration -Werror -Wno-unused-function -Wno-unused-label -D_REENTRANT -c -o lib_sys_la-sys.lo `test -f 'sys.c' || echo '../../../../../src/MonetDB/src/modules/plain/'`sys.c gcc -DHAVE_CONFIG_H -I. -I../../../../../src/MonetDB/src/modules/plain -I../../.. -I../../../../../src/MonetDB/src/modules/plain -I../../common -I../../../../../src/MonetDB/src/modules/plain/../../common -I../../gdk -I../../../../../src/MonetDB/src/modules/plain/../../gdk -I../../monet -I../../../../../src/MonetDB/src/modules/plain/../../monet -DLIBSYS -g -O2 -std=c99 -Wall -W -Werror-implicit-function-declaration -Werror -Wno-unused-function -Wno-unused-label -D_REENTRANT -c sys.c -fPIC -DPIC -o .libs/lib_sys_la-sys.o ../../../../../src/MonetDB/src/modules/plain/sys.mx: In function 'view_gdk_cpu': ../../../../../src/MonetDB/src/modules/plain/sys.mx:1337: error: 'CLK_TCK' undeclared (first use in this function) ../../../../../src/MonetDB/src/modules/plain/sys.mx:1337: error: (Each undeclared identifier is reported only once ../../../../../src/MonetDB/src/modules/plain/sys.mx:1337: error: for each function it appears in.) make[7]: *** [lib_sys_la-sys.lo] Error 1 make[7]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules/plain' make[6]: *** [all] Error 2 make[6]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules/plain' make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules' make[4]: *** [all] Error 2 make[4]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src/modules' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src' make[2]: *** [all] Error 2 make[2]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/local/kader/home/MonetDB_XQuery_CVS/build/MonetDB' make: *** [all] Error 2 =================================================================================
Any Idea?
Thanks again. Riham
Stefan Manegold wrote:
Hi Riham,
you need to set your PYTHONPATH to make python find the autogen module.
From buildtools/autogen/README: ======== If you use the --prefix option or otherwise install autogen in a different place, you may have to set your PYTHONPATH environment variable accordingly. The directory which needs to be added is <install-dir-prefix>/lib(64)/python<python-version>/site-packages, where
Stefan
On Mon, Oct 02, 2006 at 05:45:17PM +0200, Riham wrote:
Hi Stefan,
I have in fact commented both lines #if/#endif in mel.mx file, but have kept everything in between. This way it worked and did not get the error again. But when I bootstrap monetdb i get the followiing message: ================================================================ kader@wlan139064:~/home/MonetDB_XQuery_CVS/src/MonetDB> ./bootstrap automake 1.9.6 is 1.5 or newer. Good. autoconf 2.60 is 2.57 or newer. Good. libtool 1.5.22 is 1.4 or newer. Good. Python 2.4.3 is 2.0.0 or newer. Good. Traceback (most recent call last): File "/local/kader/home/MonetDB_XQuery_CVS/monetdb_xquery/bin/autogen.py", line 29, in ? from autogen import am ImportError: No module named autogen ================================================================= Of course, the configure file is not generated afterwards and thus could not continue the deployment.
I am working on Suse10.2.
Thank you for trying to help, Riham
Stefan Manegold wrote:
On Mon, Oct 02, 2006 at 12:47:39PM +0200, Niels Nes wrote:
On Mon, Oct 02, 2006 at 12:32:22PM +0200, Riham wrote:
> Hi, > > I am a new PhD student at the University of Twente. I am working with > Dr. Maurice van Keulen on Optimizing Pathfinder queries. I was > installing Monet on my new linux system and I got the following error: > > =========================================================================== > kader@netloosewi840:~/home/MonetDB_XQuery_CVS/build/buildtools> make > cd > ""/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/../../src/buildtools"/autogen" > && python setup.py build > running build > running build_py > running build_scripts > cd _MX && make MAKE=make all > make[1]: Entering directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MX' > make all-am > make[2]: Entering directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MX' > make[2]: Nothing to be done for `all-am'. > make[2]: Leaving directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MX' > make[1]: Leaving directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MX' > cd _MEL && make MAKE=make all > make[1]: Entering directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL' > make all-am > make[2]: Entering directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL' > g++ -g -o mel any_arg.o atom_arg.o atom.o atomops.o bat_arg.o > builtin.o command.o debug.o depend.o dependency.o epilogue.o > FileInfo.o glue.o html.o iterator.o link.o ListIterator.o mel.o > mel.tab.o mel.yy.o mil.o module.o object.o operator.o ops.o prelude.o > proto.o symbol.o symtable.o type_arg.o use.o var_arg.o > mel.tab.o: In function `semerror()': > /local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.yy:471: > undefined reference to `yylineno' > /local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.yy:472: > undefined reference to `yylineno' > mel.tab.o: In function `yyparse()': > /local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.yy:59: > undefined reference to `yylineno' > /local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.yy:67: > undefined reference to `yylineno' > /local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.yy:131: > undefined reference to `yylineno' > mel.yy.o:/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL/mel.ll:253: > more undefined references to `yylineno' follow > collect2: ld returned 1 exit status > make[2]: *** [mel] Error 1 > make[2]: Leaving directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL' > make[1]: *** [all] Error 2 > make[1]: Leaving directory > `/local/kader/home/MonetDB_XQuery_CVS/build/buildtools/_MEL' > make: *** [all] Error 2 > =========================================================================== > > The flex and bison versions I have are 2.5.33 and 2.3 respectively. > I was advised by Jan Flokstra to report the error to you. I hope you > have sufficient information to know the origin of the problem, if not > please let me know. > > Thank you for your help, > Riham Abdel Kader. > > > As of flex 2.5.31 the yylineno was defined by flex. Normaly we define it our selfs.
You could try to patch the following line from mel.mx
#if !defined(YY_FLEX_SUBMINOR_VERSION) || YY_FLEX_SUBMINOR_VERSION < 5 /* flex 2.5.31 declares yylineno. I don't know which other versions do as well. */ int yylineno; #endif
Simply removed the #if/#endif should work. A better solution is to know which range between 2.5.6 and 2.5.31/32 have a yylineno defined. And fix the second part of the #ifdef.
Niels
Niels, Riham,
I haven't analysed the problem any further, yet, but I think it might also be related to bison 2.3 or the combination of bison 2.3 and flex 2.5.33. In out nightly testing pool (cf., http://monetdb.cwi.nl/Development/TestWeb/), we use flex 2.5.4 & flex 2.5.33 and bison 1.875, 2.0, 2.1, 2.2, and everything works fine. We don't use bison 2.3, yet ...
Riham,
which linux distribution (name & version) are you using?
Does Niels' patch work for you?
Stefan
kader@wlan139064:~/home/MonetDB_XQuery_CVS/build/MonetDB> ../../src/MonetDB/configure --prefix=/local/kader/home/MonetDB_XQuery_CVS/monetdb_xquery checking build system type... i686-suse-linux-gnu checking host system type... i686-suse-linux-gnu checking target system type... i686-suse-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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