14 Apr
2009
14 Apr
'09
12:04 p.m.
Hi Sjoerd, Thanks for the question. I wrote earlier last night an email to this list, which I thought covers this. The answer regarding backward compatibility is: (1) NO, on repositories created by MonetDB configures with --enable-bits=64 --enable-oid32 (2) YES, in all other cases. It is my understanding that few people use (1). If the MonetDB team agrees, I would propose not to take additional migration measures. If otherwise, ie if we go to a migration anyway, we might also consider changing the new type stridx_t in the (2) cases from var_t to unsigned short. It reduces the fixed overhead of string heaps of small bats (2KB instead of 4KB on 32-bits, 8KB on 64 bits). I refrained from doing so to keep (2) backward compatible. Peter > -----Original Message----- > From: Sjoerd Mullender [mailto:sjoerd@acm.org] > Sent: Tuesday, April 14, 2009 1:41 PM > To: monetdb-developers@lists.sourceforge.net > Cc: monetdb-checkins@lists.sourceforge.net > Subject: Re: [Monetdb-checkins] MonetDB/src/gdk gdk.mx, , 1.279, 1.280 > gdk_atoms.mx, , 1.161, 1.162 gdk_bat.mx, , 1.214, 1.215 gdk_batop.mx, , > 1.170, 1.171 gdk_bbp.mx, , 1.252, 1.253 gdk_heap.mx, , 1.117, 1.118 > gdk_qsort.mx, , 1.34, 1.35 gdk_ssort.mx, , 1.15, 1... > > Is this a backward compatible change? In other words, can databases > created before this change be read by the new version? > > I really want backward compatibility, so if it isn't, some kind of > conversion would be needed. > > Peter Boncz wrote: > > Update of /cvsroot/monetdb/MonetDB/src/gdk > > In directory 23jxhf1.ch3.sourceforge.com:/tmp/cvs-serv5363/src/gdk > > > > Modified Files: > > gdk.mx gdk_atoms.mx gdk_bat.mx gdk_batop.mx gdk_bbp.mx > > gdk_heap.mx gdk_qsort.mx gdk_ssort.mx gdk_utils.mx > > Log Message: > > support for 32GB string heaps in 64bits/oid32 mode > > (implies bat format change but ONLY for 64bits/oid32) > > > > src/gdk/gdk.mx > > - introduce GDK_VARSHIFT, var_t (str indices) are to be shifted that > > amount of bits to get to the real offset (padding is 8, in case > > of 64-bits and oid32 -- otherwise it is 0 => no change) > > - clean up usage of var_t in HEAP_* interface > > > > src/gdk/gdk_atoms.mx > > - str heaps with difficult double lim distrubution do not maintain > > a linked list (direct open hashing only) > > - allow internal string heap hash table pointers to be unsigned shorts > > instead of var_t (only switched on for 64bits/oid32) > > - double-elim string heaps scaled back to 64KB (from 256-512KB) > > - support for GDK_VARSHIFT > > > > src/gdk/gdk_bat.mx > > - bugfix in 64bits/oid32 offset calculation (precision loss averted) > > > > src/gdk/gdk_batop.mx > > src/gdk/gdk_bbp.mx > > src/gdk/gdk_qsort.mx > > src/gdk/gdk_ssort.mx > > - support for GDK_VARSHIFT > > > > src/gdk/gdk_heap.mx > > - HEAPmargin allocates large VM area after a block alloc in 64-bits > > (this to stimulate in-place HEAPextend without memcpy) > > - clean up use of var_t/size_t in HEAP_* functions, and support for > GDK_VARSHIFT > > > > src/gdk/gdk_utils.mx > > - increase VM size for 64-bits systems to 4TB > > > > > > > > U gdk.mx > > Index: gdk.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk.mx,v > > retrieving revision 1.279 > > retrieving revision 1.280 > > diff -u -d -r1.279 -r1.280 > > --- gdk.mx 3 Apr 2009 09:14:51 -0000 1.279 > > +++ gdk.mx 13 Apr 2009 23:36:24 -0000 1.280 > > @@ -1068,9 +1068,9 @@ > > @item void > > HEAP_destroy (Heap* h) > > @item var_t > > -HEAP_malloc (Heap* heap, var_t nbytes) > > +HEAP_malloc (Heap* heap, size_t nbytes) > > @item void > > -HEAP_free (Heap *heap, size_t block) > > +HEAP_free (Heap *heap, var_t block) > > @item int > > HEAP_private (Heap* h) > > @item void > > @@ -1111,7 +1111,7 @@ > > int (*sizefcn) (ptr) /* BATatoms[].atomLen > function */ > > ); > > > > -gdk_export var_t HEAP_malloc(Heap *heap, var_t nbytes); > > +gdk_export var_t HEAP_malloc(Heap *heap, size_t nbytes); > > gdk_export void HEAP_free(Heap *heap, var_t block); > > gdk_export var_t HEAP_private(Heap *h); > > gdk_export void HEAP_checkformat(Heap *h); > > @@ -1350,12 +1350,37 @@ > > #define Hloc(b,p) ((b)->H->heap.base+((p)<<(b)->H->shift)) > > #define Tloc(b,p) ((b)->T->heap.base+((p)<<(b)->T->shift)) > > > > +#if SIZEOF_VAR_T < SIZEOF_VOID_P > > +/* NEW 11/4/2009: when compiled with 32-bits oids/var_t on 64-bits > systems, align heap strings > > + * on 8 byte boundaries always (wasting 4 padding bytes on avg). Note > that in heaps where > > + * duplicate elimination is succesful, such padding occurs anyway (as an > aside, a better > > + * implementation with two-bytes pointers in the string heap hash table, > could reduce that > > + * padding to avg 1 byte wasted -- see TODO below). > > + * > > + * This 8 byte alignment allows the offset in the fixed part of the BAT > string column to be > > + * interpreted as an index, which should be multiplied by 8 to get the > position (VARSHIFT). The > > + * overall effect is that 32GB heaps can be addressed even when oids are > limited to 4Gtuples. > > + * > > + * In the future, we might extend this such that the string alignment is > set in the BAT header > > + * (columns with long strings take more storage space, but could > tolerate more padding). > > + * It would mostly work, only the sort routine and strPut/strLocate > (which do not see the BAT > > + * header) extra parameters would be needed in their APIs. > > + */ > > +typedef unsigned short stridx_t; > > +#define GDK_VARSHIFT 3 > > +#define GDK_VARALIGN (1<> +#else > > +typedef var_t stridx_t; /* TODO: should also be unsigned short, but kept > at var_t not to break BAT images */ > > +#define GDK_VARSHIFT 0 > > +#define GDK_VARALIGN sizeof(stridx_t) > > +#endif > > + > > #define BUNhloc(bi,p) Hloc((bi).b,p) > > #define BUNtloc(bi,p) Tloc((bi).b,p) > > #define BUNhpos(bi,p) (Hpos(&(bi),p)) > > #define BUNtpos(bi,p) (Tpos(&(bi),p)) > > -#define BUNhvar(bi,p) ((bi).b- > >htype?(Hbase((bi).b)+*((var_t*)BUNhloc(bi,p))):BUNhpos(bi,p)) > > -#define BUNtvar(bi,p) ((bi).b- > >ttype?(Tbase((bi).b)+*((var_t*)BUNtloc(bi,p))):BUNtpos(bi,p)) > > +#define BUNhvar(bi,p) ((bi).b- > >htype?(Hbase((bi).b)+((*(var_t*)BUNhloc(bi,p))< p)) > > +#define BUNtvar(bi,p) ((bi).b- > >ttype?(Tbase((bi).b)+((*(var_t*)BUNtloc(bi,p))< p)) > > #define BUNhead(bi,p) ((bi).b- > >hvarsized?BUNhvar(bi,p):BUNhloc(bi,p)) > > #define BUNtail(bi,p) ((bi).b- > >tvarsized?BUNtvar(bi,p):BUNtloc(bi,p)) > > > > > > U gdk_atoms.mx > > Index: gdk_atoms.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_atoms.mx,v > > retrieving revision 1.161 > > retrieving revision 1.162 > > diff -u -d -r1.161 -r1.162 > > --- gdk_atoms.mx 7 Apr 2009 11:53:22 -0000 1.161 > > +++ gdk_atoms.mx 13 Apr 2009 23:36:24 -0000 1.162 > > @@ -175,7 +175,6 @@ > > gdk_export int strLen(const char *s); > > gdk_export int strCmp(str l, str r); > > gdk_export int strNil(str s); > > -gdk_export void strHeapConvert(Heap *h, int directon); > > gdk_export int strElimDoubles(Heap *h); > > gdk_export var_t strLocate(Heap *h, str v); > > gdk_export int strCmpNoNil(unsigned char *l, unsigned char *r); > > @@ -457,7 +456,7 @@ > > 0, 0, > > (var_t (*)(Heap *, var_t *, ptr)) strPut, 0, > > (int (*)(ptr)) strLen, strHeap, > > - (void (*)(Heap *, int)) strHeapConvert, 0}, > > + (void (*)(Heap *, int)) 0, 0}, > > }; > > int GDKatomcnt = TYPE_str + 1; > > > > @@ -931,24 +930,25 @@ > > } \ > > } while (0) > > > > -#define GDK_STRHASHTABLE (1<<10) > > +/* string heaps: > > + * - strings are 8 byte aligned > > + * - start with a 1024 bucket hash table > > + * - heaps < 64KB are fully duplicate eliminated with this hash tables > > + * - heaps >= 64KB are opportunistically (imperfect) duplicate > eliminated > > + * as only the last 128KB chunk is considered and there is no linked > list > > + * - buckets and next pointers are unsigned short "indices" > > + * - indices should be multiplied by 8 and takes from ELIMBASE to get an > offset > > + * > > + * Note that a 64KB chunk of the heap contains at most 8K 8-byte aligned > > + * strings. The 1K bucket list means that in worst load, the list length > is 8 (OK). > > + */ > > +#define GDK_STRHASHTABLE (1<<10) /* 1024 */ > > #define GDK_STRHASHMASK (GDK_STRHASHTABLE-1) > > -#define GDK_STRHASHSIZE (GDK_STRHASHTABLE * sizeof(var_t)) > > -#define GDK_STRHASHCREDIT(h) (((var_t*) (h)- > >base)[GDK_STRHASHTABLE]) > > +#define GDK_STRHASHSIZE (GDK_STRHASHTABLE * sizeof(stridx_t)) > > +#define GDK_ELIMPOWER 16 /* 64KB is the threshold */ > > #define GDK_ELIMDOUBLES(h) ((h)->free < GDK_ELIMLIMIT) > > -#define GDK_ELIMLIMIT (1< > +#define GDK_ELIMLIMIT (1< ELIMBASE == 0 */ > > #define GDK_ELIMBASE(x) (((x) >> GDK_ELIMPOWER) << > GDK_ELIMPOWER) > > -#if SIZEOF_SIZE_T == SIZEOF_INT > > -#define GDK_ELIMPOWER 16 /* makes for a max 64KB hash > table > > - * ie 256 string bytes per hash bucket > > - * ~ 4 strings of UP4(8<=len<=11)=12 + 4 > bytes > > - */ > > -#else > > -#define GDK_ELIMPOWER 17 /* makes for a max 128KB hash > table > > - * ie 512 string bytes per hash bucket > > - * ~ 5 strings of UP8(8<=len<=15)=16 + 8 > bytes > > - */ > > -#endif > > > > @- Atomic ADT functions > > @c > > @@ -1767,46 +1767,34 @@ > > Because in many typical situations lots of double string values occur > > in tables, the string insertion provides automatic double elimination. > > To do this, a GDK_STRHASHTABLE(=1024) bucket hashtable is hidden in the > first > > -4096 (8192 on 64-bit architectures) bytes of the string heap, consisting > of integer offsets of the first > > -string hashing to that bucket in the heap. Furthermore, the first 4(8) > bytes > > -before each string in the heap is an integer offset to the next string > hashing > > -to the same number. > > +4096 bytes of the string heap, consisting an offset to the first string > > +hashing to that bucket in the heap. > > +These offsets are made small (stridx_t is an unsigned short) by > exploiting > > +the fact that the double elimination chunks are (now) 64KB, hence a > short > > +suffices. > > > > -However, in many other situations the cardinality of string columns is > large, > > +In many other situations the cardinality of string columns is large, > > or the string values might even be unique. In those cases, our fixed- > size hash > > table will start to overflow quickly. Therefore, after the hash table is > full > > (this is measured very simplistically by looking whether the string heap > exceeds a > > -heap size = GDK_ELIMLIMIT -- done this way to keep compatibility with > old bat images) > > -we flush the hash table. If one views the string heaps as consecutive > chunks > > -of size GDK_ELIMLIMIT bytes, then all strings within one chunk are > double-eliminated. > > -There is a macro GDK_ELIMBASE(offset) that computes the base of the > chunk in which > > -a certain byte-offset falls. > > -@- > > -This is a departure from our previous policy of not looking at the hash > tables at > > -all after overflow occurred. The advantage of the new approach is that > if we have > > -a value distribution that is skewed (ie some values are very frequent), > these > > -values will always be double eliminated, saving a considerable amount of > space. > > -Disadvantage of the approach is that we always have to reserve space for > the next > > -pointer (4(8) byte integer offset) that is stored right in front of the > string (and > > -consequently have to keep all string chunks and offsets aligned to > 4(8)). All this > > -translates into some wasted space. However, if there are that many > different strings > > -that the hash table overflows, the strings must be relatively long and > the relative > > -storage overhead should be low. > > +heap size = GDK_ELIMLIMIT = 64KB) we flush the hash table. Even more, > from that moment > > +on, we do not use a linked list, but a lossy hash table that just > contains > > +the last position for each bucket. Basically, after exceeding > GDK_ELIMLIMIT, > > +we get a probabilistic/opportunistic duplicate elimination mechanism, > > +that only looks at the last GDK_ELIMLIMIT chunk in the heap, in a lossy > way. > > + > > +When comparing with the previous string implementation, the biggest > difference > > +is that on 64-nbits bt with 32-bits oids, strings are always 8-byte > aligned > > +and var_t numbers are multiplied by 8 to get the true offset. The goal > to do > > +this is to allow 32-bits var_t on 64-bits systems to address 32GB (using > string > > +alignment=8). For large database, the cost of padding (4 bytes avg) is > offset > > +by the savings in var_t (allowing to go from 64- to 32-bits). Nothing > lost there, > > +and 32-bits var_t also pay in smaller OIDs and smaller hash tables, > reducing memory > > +pressure. For small duplicate eliminated heaps, the short indices > > +used in the hash table have now allowed more buckets (2K instead of 1K) > > +and average 2 bytes overhead for the next pointers instead of 6-12. > Therefore > > +small heaps are now more compact than before. > > @- > > -Notice that this mechanism enables to keep a certain linear storage > property > > -in the string heaps. This is important if we want to take a BATslice on > a BAT > > -by simply loading or @strong{mmap()}ping slices of the BAT files on disk > into memory. > > -This is relevant in order to process a very large BAT iteratively by > taking slices > > -in order to reduce memory consumption. Notice that if there are few > different string > > -values, the hash table has not overflowed, and the string heap size will > be small > > -(i.e. < GDK_ELIMLIMIT), so in those cases it is not a problem to load > the entire string heap. > > -If the hash table @strong{has} overflowed, we want to be able to only > map a slice of the > > -string heap as well. Now, given that the first string in the BAT-slice > is called F1 > > -and its heap offset is O1 and the last string in the slice is F2 and its > > -offset is O2, then the slice we should take from the string heap is: > > -@example > > -GDK_ELIMBASE(F1) .. MAX(GDK_ELIMBASE(F2)+GDK_ELIMLIMIT), O2+strlen(F2)) > > -@end example > > The routine strElimDoubles() can be used to check whether all > > strings are still being double-eliminated in the original hash-table. > > Only then we know that unequal offset-integers in the BUN array means > > @@ -1877,16 +1865,12 @@ > > strHeap(Heap *d, size_t cap) > > { > > size_t size; > > - var_t *h, *e; > > > > cap = MAX(cap, BATTINY); > > - size = (GDK_STRHASHTABLE + 1) * sizeof(var_t) + MIN(GDK_ELIMLIMIT, > cap * 12); > > + size = GDK_STRHASHTABLE * sizeof(stridx_t) + MIN(GDK_ELIMLIMIT, cap * > GDK_VARALIGN); > > if (HEAPalloc(d, size, 1) >= 0) { > > - d->free = GDK_STRHASHTABLE * sizeof(var_t); > > - h = (var_t *) d->base; > > - for (e = h; e < h + GDK_STRHASHTABLE; e++) { > > - *e = 0; > > - } > > + d->free = GDK_STRHASHTABLE * sizeof(stridx_t); > > + memset(d->base, 0, d->free); > > } > > } > > > > @@ -1923,42 +1907,10 @@ > > void > > strCleanHash(Heap *h, int rebuild) > > { > > + (void) rebuild; > > if (!GDK_ELIMDOUBLES(h)) { > > /* flush hash table for security */ > > memset(h->base, 0, GDK_STRHASHSIZE); > > - } else if (rebuild) { > > - var_t xx, cur = 0, end = 0; > > - str hash = (str) h->base; > > - > > -/* int cnt[GDK_STRHASHTABLE]; */ > > - /* collect all values in one big linked list */ > > - for (xx = 0; xx < GDK_STRHASHTABLE; xx++) { > > - var_t yy = ((var_t *) hash)[xx]; > > - > > -/* cnt[xx]=0; */ > > - ((var_t *) hash)[xx] = 0; /* clear hash table slot */ > > - > > - if (end) { > > - *(var_t *) (hash + end) = yy; > > - } else { > > - cur = yy; > > - } > > - for (; yy; yy = *(var_t *) (hash + yy)) > > - end = yy; > > - } > > - > > - /* process the linked list, inserting the values again */ > > - for (; cur; cur = end) { > > - str val = hash + cur; > > - GDK_STRHASH(val + sizeof(var_t), xx); > > - xx &= GDK_STRHASHMASK; > > - end = *(var_t *) val; > > - *(var_t *) val = ((var_t *) hash)[xx]; > > - ((var_t *) hash)[xx] = cur; > > -/* cnt[xx]++; */ > > - } > > -/* for(xx=0; xx > - if(cnt[xx]) stream_printf(GDKout, "%5d %6d", xx, cnt[xx]); */ > > } > > } > > > > @@ -1970,90 +1922,63 @@ > > var_t > > strLocate(Heap *h, str v) > > { > > - var_t *htab = (var_t *) h->base; > > - var_t *l, *e; > > - BUN idx; > > - > > - GDK_STRHASH(v, idx); > > - e = htab + (idx & GDK_STRHASHMASK); > > - if (*e) { > > - for (l = e; *l && *l < h->free; l = (var_t *) ((char *) h->base > + *l)) { > > - str x = (str) ((char *) h->base + *l + sizeof(var_t)); > > - > > - if (GDK_STRCMP(v, x) == 0) { > > - return *l + (var_t) sizeof(var_t); > > - } > > - } > > - } > > - return 0; > > -} > > + stridx_t *ref, *next; > > > > -#if SIZEOF_SIZE_T == SIZEOF_INT > > -#define normal_vart_SWAP(x) ((var_t) normal_int_SWAP((int)x)) > > -#else > > -#define normal_vart_SWAP(x) ((var_t) long_long_SWAP((lng)x)) > > -#endif > > + /* search hash-table, if double-elimination is still in place */ > > + BUN off; GDK_STRHASH(v, off); > > + off &= GDK_STRHASHMASK; > > > > -/* convert the integers in the implicit hash table structure */ > > -void > > -strHeapConvert(Heap *h, int dir) > > -{ > > - var_t *htab = (var_t *) h->base; > > - var_t *l, i, j; > > + /* should only use strLocate iff fully double eliminated */ > > + assert(GDK_ELIMBASE(h->free) == 0); > > > > - if (dir == CONV_HTON) { > > - for (i = 0; i < GDK_STRHASHTABLE; i++) { > > - for (l = htab + i; (j = *l) != 0 && j < h->free; l = > (var_t *) (h->base + j)) { > > - *l = normal_vart_SWAP(j); > > - } > > - } > > - } else { > > - for (i = 0; i < GDK_STRHASHTABLE; i++) { > > - for (l = htab + i; (j = *l) != 0 && j < h->free; l = > (var_t *) (h->base + *l)) { > > - *l = normal_vart_SWAP(j); > > - } > > - } > > + /* search the linked list */ > > + for (ref = ((stridx_t *) h->base) + off; *ref; ref = next) { > > + next = (stridx_t*) (h->base + *ref); > > + if (GDK_STRCMP(v, (str) (next+1)) == 0) > > + return (sizeof(stridx_t) + *ref) >> GDK_VARSHIFT; /* > found */ > > } > > + return 0; > > } > > > > var_t > > strPut(Heap *h, var_t *dst, str v) > > { > > - var_t *l; > > - size_t i = GDK_STRLEN(v); > > - BUN off; > > - > > - /* round up to var_t-byte alignment + var_t (next pointer) */ > > - size_t len = ((i + sizeof(var_t) - 1) & ~(sizeof(var_t) - 1)) + > sizeof(var_t); > > - size_t elimlimit = GDK_ELIMBASE(h->free) + GDK_ELIMLIMIT; > > + size_t elimbase = GDK_ELIMBASE(h->free); > > + size_t pad = GDK_VARALIGN - (h->free & (GDK_VARALIGN-1)); > > + size_t pos, len = GDK_STRLEN(v); > > + stridx_t *bucket, *ref, *next; > > > > /* search hash-table, if double-elimination is still in place */ > > - GDK_STRHASH(v, off); > > + BUN off; GDK_STRHASH(v, off); > > off &= GDK_STRHASHMASK; > > - for (l = ((var_t *) h->base) + off; *l && *l < h->free; l = (var_t *) > (h->base + *l)) { > > - str x = (str) (h->base + *l + sizeof(var_t)); > > + bucket = ((stridx_t *) h->base) + off; > > > > - if (GDK_STRCMP(v, x) == 0) { > > - *dst = *l + (var_t) sizeof(var_t); /* already in heap; > do not insert! */ > > - if (GDK_ELIMDOUBLES(h) == 0 && GDK_STRHASHCREDIT(h)) > > - GDK_STRHASHCREDIT(h) += 4; > > - return *dst; > > + if (elimbase == 0) { /* small string heap (<64KB) -- fully double > eliminated */ > > + for (ref = bucket; *ref; ref = next) { /* search the linked > list */ > > + next = (stridx_t*) (h->base + *ref); > > + if (GDK_STRCMP(v, (str) (next+1)) == 0) { /* found */ > > + pos = sizeof(stridx_t) + *ref; > > + return *dst = (pos >> GDK_VARSHIFT); > > + } > > } > > - } > > - > > - /* flush the hash table if it becomes too big (implies > !GDK_ELIMDOUBLES) */ > > - if (h->free + len >= elimlimit) { > > - /* if we are not hash-inserting anymore, h->free may no longer > be var_t aligned */ > > - size_t mask = h->free & (sizeof(var_t) - 1); > > - > > - if (mask) > > - h->free += sizeof(var_t) - mask; /* realign */ > > - memset(h->base, 0, GDK_STRHASHSIZE); /* start over hash > inserting in a pristine hash table */ > > - GDK_STRHASHCREDIT(h) = 32; /* only tolerate limited misses > in the future */ > > + /* is there room for the next pointer in the padding space? */ > > + if (pad < sizeof(stridx_t)) > > + pad += GDK_VARALIGN; /* if not, pad more */ > > + } else { > > + /* large string heap (>=64KB) -- opportunistic/probabilistic > double elimination */ > > + pos = elimbase + *bucket; > > + if (GDK_STRCMP(v, (str) (h->base + pos)) == 0) { > > + return *dst = (pos >> GDK_VARSHIFT); /* already in heap; > do not insert! */ > > + } > > +#if SIZEOF_VAR_T < SIZEOF_VOID_P > > + pad &= (GDK_VARALIGN-1); /* a full VARALIGN pad can be omitted > */ > > +#else > > + pad = 0; /* only 32-bits var_t in 64-bits needs padding */ > > +#endif > > } > > > > /* check heap for space (limited to a certain maximum after which > nils are inserted) */ > > - if (h->free + len >= h->size) { > > + if (h->free + pad + len >= h->size) { > > /* Something really strange happens here, In a special case > > (Pentium II Klamath, gcc version 2.96 20000731, > > GNU assembler version 2.10.90 using BFD version 2.10.0.18) > > @@ -2064,11 +1989,15 @@ > > */ > > float batmargin = (float) BATMARGIN; > > float hnewsize = h->size * batmargin; > > - size_t newsize = len + (size_t) hnewsize; > > + size_t newsize = pad + len + (size_t) hnewsize; > > > > assert(newsize); > > > > - if (h->free + len < h->maxsize) { > > + if (h->free + pad + len >= (((size_t) VAR_MAX) << > GDK_VARSHIFT)) { > > + GDKerror("strPut: string heaps gets larger than %dGB.\n", > (((size_t) VAR_MAX) << GDK_VARSHIFT) >> 30); > > + return 0; > > + } > > + if (h->free + pad + len < h->maxsize) { > > /* if there is reserved space, first use the reserved > space */ > > newsize = MIN(newsize, h->maxsize); > > } > > @@ -2077,32 +2006,27 @@ > > } > > /* fill should solve initialisation problems within valgrind */ > > memset(h->base + h->free, 0, h->size - h->free); > > - } > > > > - if (!GDK_ELIMDOUBLES(h)) { > > - if (GDK_STRHASHCREDIT(h) == 0) { > > - /* if credits are gone, we do not hash insert at all */ > > - if (h->free > VAR_MAX) { > > - GDKerror("strPut: string heaps gets larger than 2GB > -- too large for 32-bits oids.\n"); > > - return 0; > > - } > > - *dst = (var_t) h->free; > > - memcpy(h->base + h->free, v, i); > > - h->free += i; /* in this case, we do not round to > var_t either */ > > - return *dst; > > - } > > - GDK_STRHASHCREDIT(h)--; > > + /* make bucket point into the enw heap */ > > + bucket = ((stridx_t *) h->base) + off; > > } > > > > - /* insert string in hash table and copy into the heap */ > > - l = (var_t *) (h->base + h->free); > > - *(l++) = ((var_t *) h->base)[off]; > > - assert(h->free + sizeof(var_t) <= VAR_MAX); > > - ((var_t *) h->base)[off] = (var_t) h->free; > > - *dst = (var_t) (h->free + sizeof(var_t)); > > - h->free += len; > > - memcpy((char *) l, v, i); > > + /* insert string */ > > + pos = h->free + pad; > > + *dst = pos >> GDK_VARSHIFT; > > + memcpy(h->base + pos, v, len); > > + h->free += pad + len; > > + > > + /* maintain hash table */ > > + if (elimbase == 0) { /* small string heap: link the next pointer */ > > + pos -= sizeof(stridx_t); /* the stridx_t next pointer directly > precedes the string */ > > + *(stridx_t*) (h->base + pos) = *bucket; > > + } > > + *bucket = (stridx_t) (pos - elimbase); /* set bucket to the new > string */ > > > > + if (h->free >= elimbase + GDK_ELIMLIMIT) { > > + memset(h->base, 0, GDK_STRHASHSIZE); /* flush hash table */ > > + } > > return *dst; > > } > > > > > > U gdk_bbp.mx > > Index: gdk_bbp.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_bbp.mx,v > > retrieving revision 1.252 > > retrieving revision 1.253 > > diff -u -d -r1.252 -r1.253 > > --- gdk_bbp.mx 9 Apr 2009 15:29:18 -0000 1.252 > > +++ gdk_bbp.mx 13 Apr 2009 23:36:24 -0000 1.253 > > @@ -2965,9 +2965,9 @@ > > BATsetcount(&bs->B, 0); > > > > if (bs->H.vheap) > > - memset(bs->H.vheap->base, 0, bs->H.vheap->free = > GDK_STRHASHTABLE * sizeof(var_t)); > > + memset(bs->H.vheap->base, 0, bs->H.vheap->free = > GDK_STRHASHTABLE * sizeof(stridx_t)); > > if (bs->T.vheap) > > - memset(bs->T.vheap->base, 0, bs->T.vheap->free = > GDK_STRHASHTABLE * sizeof(var_t)); > > + memset(bs->T.vheap->base, 0, bs->T.vheap->free = > GDK_STRHASHTABLE * sizeof(stridx_t)); > > return bs; > > } > > BATDEBUG THRprintf(GDKout, "#BBPrecycle %d %d "SZFMT" (%d, %d %d %d) > N2\n", ht, tt, cap, BATCACHE_NOTYPE(ht), BATCACHE_NOTYPE(tt), > batcache_maxbuckets, bin); > > > > U gdk_batop.mx > > Index: gdk_batop.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_batop.mx,v > > retrieving revision 1.170 > > retrieving revision 1.171 > > diff -u -d -r1.170 -r1.171 > > --- gdk_batop.mx 7 Jan 2009 14:13:48 -0000 1.170 > > +++ gdk_batop.mx 13 Apr 2009 23:36:24 -0000 1.171 > > @@ -1656,7 +1656,7 @@ > > if (b->hkey == 0) { > > /* sorted and key? */ > > while (cur < end) { > > - char *val = base + *(((var_t *)b->H- > >heap.base)+ cur); > > + char *val = base + (*(((var_t *)b->H- > >heap.base)+ cur) << GDK_VARSHIFT); > > > > if (cmp(prv, val) @5= 0) { > > key = FALSE; > > @@ -1668,7 +1668,7 @@ > > } > > /* sorted? */ > > while (cur < end) { > > - char *val = base + *(((var_t *)b->H- > >heap.base)+ cur); > > + char *val = base + (*(((var_t *)b->H- > >heap.base)+ cur) << GDK_VARSHIFT); > > > > if (cmp(prv, val) @5 0) { > > /* record negative position info */ > > > > U gdk_utils.mx > > Index: gdk_utils.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_utils.mx,v > > retrieving revision 1.246 > > retrieving revision 1.247 > > diff -u -d -r1.246 -r1.247 > > --- gdk_utils.mx 9 Apr 2009 18:48:25 -0000 1.246 > > +++ gdk_utils.mx 13 Apr 2009 23:36:24 -0000 1.247 > > @@ -382,7 +382,7 @@ > > #define GDK_MEM_NULLALLOWED > > > > #if SIZEOF_VOID_P==8 > > -#define GDK_VM_MAXSIZE LL_CONSTANT(137438953472) /* :-) a 64-bit > OS: 128 GB */ > > +#define GDK_VM_MAXSIZE LL_CONSTANT(4398046511104) /* :-) a 64-bit > OS: 4TB */ > > #else > > #define GDK_VM_MAXSIZE LL_CONSTANT(1610612736) /* :-| a 32-bit OS: > 1.5GB */ > > #endif > > > > U gdk_heap.mx > > Index: gdk_heap.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_heap.mx,v > > retrieving revision 1.117 > > retrieving revision 1.118 > > diff -u -d -r1.117 -r1.118 > > --- gdk_heap.mx 20 Mar 2009 11:59:57 -0000 1.117 > > +++ gdk_heap.mx 13 Apr 2009 23:36:24 -0000 1.118 > > @@ -75,8 +75,20 @@ > > nice). > > @{ > > @c > > -int > > -HEAPalloc(Heap *h, size_t nitems, size_t itemsize) > > +size_t HEAPmargin(size_t maxsize) { > > + size_t ret; > > +#if SIZEOF_VOID_P == 8 > > + /* in 64-bits systems, try to enforce in-place realloc, but provoke > the memcpy on 256MB, then 4GB */ > > + size_t use = GDKvm_cursize(); > > + ret = MIN(GDK_mem_maxsize, MAX(((size_t) 1) << 26, 16*maxsize)); > > + if ((ret+ret) > (GDK_vm_maxsize-MIN(GDK_vm_maxsize,use))) /* only if > room */ > > +#endif > > + ret = ((double) BATMARGIN)*maxsize - 1; /* do not waste VM on 32-bits > */ > > + return (1 + (MAX(maxsize,ret) >> 16)) << 16; /* round up to 64K */ > > +} > > + > > +/* in 64-bits space, use very large margins to accomodate reallocations > */ > > +int HEAPalloc(Heap *h, size_t nitems, size_t itemsize) > > { > > char nme[PATHLENGTH], *ext = NULL; > > > > @@ -98,8 +110,7 @@ > > /* when using anonymous vm we malloc we need 64K chunks, also we > > * 20% extra malloc */ > > if (h->size > GDK_mem_bigsize) { > > - h->maxsize = (size_t) ((double) h->maxsize * BATMARGIN) - 1; > > - h->maxsize = (1 + (h->maxsize >> 16)) << 16; > > + h->maxsize = HEAPmargin(h->maxsize); > > } > > if (h->filename == NULL || (h->size < GDK_mmap_minsize)) { > > h->storage = STORE_MEM; > > @@ -169,17 +180,14 @@ > > /* extend a malloced heap, possibly switching over to file- > mapped storage */ > > Heap bak = *h; > > int can_mmap = h->filename && (size >= GDK_mem_bigsize || h- > >newstorage != STORE_MEM); > > - int must_mmap = can_mmap && (size >= GDK_mmap_minsize || h- > >newstorage != STORE_MEM); > > + int small_cpy = (h->size*4 < size) && (size >= > GDK_mmap_minsize); > > + int must_mmap = can_mmap && (small_cpy || h->newstorage != > STORE_MEM); > > > > h->size = size; > > > > if (can_mmap) { > > /* in anonymous vm, if have to realloc anyway, we reserve > some extra space */ > > - if (size > h->maxsize) { > > - h->maxsize = (size_t) ((double) size * BATMARGIN); > > - } > > - /* when using anonymous vm we malloc we need 64K chunks > */ > > - h->maxsize = (1 + ((h->maxsize - 1) >> 16)) << 16; > > + h->maxsize = HEAPmargin(MAX(size,h->maxsize)); > > } else { > > h->maxsize = size; /* for normal GDKmalloc, maxsize > = size */ > > } > > @@ -514,9 +522,9 @@ > > #define HEAPVERSION 20030408 > > > > typedef struct heapheader { > > - var_t head; /* index to first free block */ > > + size_t head; /* index to first free block */ > > int alignment; /* alignment of objects on heap */ > > - var_t firstblock; /* first block in heap */ > > + size_t firstblock; /* first block in heap */ > > int version; > > int (*sizefcn) (ptr); /* ADT function to ask length */ > > } HEADER32; > > @@ -524,8 +532,8 @@ > > typedef struct { > > int version; > > int alignment; > > - var_t head; > > - var_t firstblock; > > + size_t head; > > + size_t firstblock; > > int (*sizefcn) (ptr); > > } HEADER64; > > > > @@ -537,8 +545,8 @@ > > typedef HEADER64 HEADER_OTHER; > > #endif > > typedef struct hfblock { > > - var_t size; /* Size of this block in freelist */ > > - var_t next; /* index of next block */ > > + size_t size; /* Size of this block in freelist */ > > + size_t next; /* index of next block */ > > } CHUNK; > > > > @c > > @@ -546,13 +554,13 @@ > > #define roundup_4(x) (((x)+3)&~3) > > #define blocksize(h,p) ((p)->size) > > > > -static INLINE var_t > > -roundup_num(var_t number, int alignment) > > +static INLINE size_t > > +roundup_num(size_t number, int alignment) > > { > > - var_t rval; > > + size_t rval; > > > > - rval = number + (var_t) alignment - 1; > > - rval -= (rval % (var_t) alignment); > > + rval = number + (size_t) alignment - 1; > > + rval -= (rval % (size_t) alignment); > > return rval; > > } > > > > @@ -560,7 +568,7 @@ > > HEAP_private(Heap *h) > > { > > (void) h; > > - return (var_t) roundup_8(sizeof(HEADER)); > > + return (var_t) (roundup_8(sizeof(HEADER)) >> GDK_VARSHIFT); > > } > > > > #ifdef TRACE > > @@ -568,7 +576,7 @@ > > HEAP_printstatus(Heap *heap) > > { > > HEADER *hheader = HEAP_index(heap, 0, HEADER); > > - var_t block, cur_free = hheader->head; > > + size_t block, cur_free = hheader->head; > > CHUNK *blockp; > > > > THRprintf(GDKout, "#HEAP has head " SZFMT " and alignment %d and size > " SZFMT "\n", > > @@ -591,7 +599,7 @@ > > cur_free = blockp->next; > > block += blockp->size; > > } else { > > - var_t size = blocksize(hheader, blockp); > > + size_t size = blocksize(hheader, blockp); > > > > THRprintf(GDKout, "# block at " SZFMT " with size " > SZFMT "\n", block, size); > > block += size; > > @@ -611,7 +619,7 @@ > > /* > > // Calculate position of first and only free block. > > */ > > - var_t head = roundup_num((var_t) (roundup_8(sizeof(HEADER)) + > roundup_8(nprivate)), alignment); > > + size_t head = roundup_num((size_t) (roundup_8(sizeof(HEADER)) + > roundup_8(nprivate)), alignment); > > CHUNK *headp = HEAP_index(heap, head, CHUNK); > > > > assert(roundup_8(sizeof(HEADER)) + roundup_8(nprivate) <= VAR_MAX); > > @@ -629,7 +637,7 @@ > > // Fill first free block. > > */ > > assert(heap->size - head <= VAR_MAX); > > - headp->size = (var_t) (heap->size - head); > > + headp->size = (size_t) (heap->size - head); > > headp->next = 0; > > #ifdef TRACE > > THRprintf(GDKout, "#We created the following heap\n"); > > @@ -669,9 +677,9 @@ > > > > > > var_t > > -HEAP_malloc(Heap *heap, var_t nbytes) > > +HEAP_malloc(Heap *heap, size_t nbytes) > > { > > - var_t block, trail, ttrail; > > + size_t block, trail, ttrail; > > CHUNK *blockp; > > CHUNK *trailp; > > HEADER *hheader = HEAP_index(heap, 0, HEADER); > > @@ -682,15 +690,9 @@ > > > > /* add space for size field */ > > nbytes += hheader->alignment; > > - if (hheader->alignment == 8) { > > - nbytes = roundup_8(nbytes); > > - } else if (hheader->alignment == 4) { > > - nbytes = roundup_4(nbytes); > > - } else { > > - GDKfatal("HEAP_malloc: Heap structure corrupt\n"); > > - } > > + nbytes = roundup_8(nbytes); > > if (nbytes < sizeof(CHUNK)) > > - nbytes = (var_t) sizeof(CHUNK); > > + nbytes = (size_t) sizeof(CHUNK); > > > > /* > > // block -- points to block with acceptable size (if available). > > @@ -718,12 +720,12 @@ > > // If no block of acceptable size is found we try to enlarge the > heap. > > */ > > if (block == 0) { > > - var_t newsize; > > + size_t newsize; > > > > assert(heap->free + MAX(heap->free, nbytes) <= VAR_MAX); > > - newsize = (var_t) roundup_8(heap->free + MAX(heap->free, > nbytes)); > > + newsize = (size_t) roundup_8(heap->free + MAX(heap->free, > nbytes)); > > assert(heap->free <= VAR_MAX); > > - block = (var_t) heap->free; /* current end-of-heap */ > > + block = (size_t) heap->free; /* current end-of-heap */ > > > > #ifdef TRACE > > THRprintf(GDKout, "#No block found\n"); > > @@ -747,7 +749,7 @@ > > > > blockp->next = 0; > > assert(heap->free - block <= VAR_MAX); > > - blockp->size = (var_t) (heap->free - block); /* determine > size of allocated block */ > > + blockp->size = (size_t) (heap->free - block); /* determine > size of allocated block */ > > > > /* > > // Try to join the last block in the freelist and the newly > allocated > > @@ -778,7 +780,7 @@ > > // TUNE: use different amount than 2*sizeof(CHUNK) > > */ > > if (blockp->size >= nbytes + 2 * sizeof(CHUNK)) { > > - var_t newblock = block + nbytes; > > + size_t newblock = block + nbytes; > > CHUNK *newblockp = HEAP_index(heap, newblock, CHUNK); > > > > newblockp->size = blockp->size - nbytes; > > @@ -800,17 +802,17 @@ > > } > > > > block += hheader->alignment; > > - return block; > > + return block >> GDK_VARSHIFT; > > } > > > > void > > -HEAP_free(Heap *heap, var_t block) > > +HEAP_free(Heap *heap, var_t mem) > > { > > HEADER *hheader = HEAP_index(heap, 0, HEADER); > > CHUNK *beforep; > > CHUNK *blockp; > > CHUNK *afterp; > > - var_t after, before; > > + size_t after, before, block = mem << GDK_VARSHIFT; > > > > if (hheader->alignment != 8 && hheader->alignment != 4) { > > GDKfatal("HEAP_free: Heap structure corrupt\n"); > > @@ -884,10 +886,10 @@ > > HEAP_check(Heap *heap, HeapRepair *hr) > > { > > HEADER *hheader = HEAP_index(heap, 0, HEADER); > > - var_t head = hheader->head, alignshift = 2; > > - var_t block, nwords = (var_t) ((heap->free - 1) >> 7); > > + size_t head = hheader->head, alignshift = 2; > > + size_t block, nwords = (size_t) ((heap->free - 1) >> 7); > > int *freemask; > > - var_t prevblock = 0; > > + size_t prevblock = 0; > > CHUNK *blockp; > > > > hr->alignment = hheader->alignment; > > @@ -922,8 +924,8 @@ > > // Walk the freelist; register them in freemask > > */ > > for (block = hheader->head; block != 0; block = HEAP_index(heap, > block, CHUNK)->next) { > > - var_t idx = block >> alignshift; > > - var_t pos = idx >> 5; > > + size_t idx = block >> alignshift; > > + size_t pos = idx >> 5; > > int mask = 1 << (idx & 31); > > > > if ((block <= prevblock) && (block != 0)) { > > @@ -942,8 +944,8 @@ > > */ > > block = hheader->firstblock; > > while (block < heap->free) { > > - var_t idx = block >> alignshift; > > - var_t pos = idx >> 5; > > + size_t idx = block >> alignshift; > > + size_t pos = idx >> 5; > > int mask = 1 << (idx & 31); > > > > hr->validmask[pos] |= mask; > > @@ -965,8 +967,8 @@ > > // Check if there are left over free blocks > > */ > > for (block = hheader->head; block != 0; block = HEAP_index(heap, > block, CHUNK)->next) { > > - var_t idx = block >> alignshift; > > - var_t pos = idx >> 5; > > + size_t idx = block >> alignshift; > > + size_t pos = idx >> 5; > > int mask = 1 << (idx & 31); > > > > if (freemask[pos] & mask) { > > @@ -1046,14 +1048,14 @@ > > if (hheader->head > heap->free) { > > hheader->head = 0; /* cut off free block */ > > } else if (hheader->head) { > > - var_t idx = hheader->head; > > + size_t idx = hheader->head; > > > > while (idx) { > > CHUNK *blk = HEAP_index(heap, idx, CHUNK); > > > > if (idx + blk->size > heap->free) { > > assert(heap->free - idx <= VAR_MAX); > > - blk->size = (var_t) (heap->free - idx); /* cut > off illegal tail of block */ > > + blk->size = (size_t) (heap->free - idx); /* cut > off illegal tail of block */ > > } > > if (blk->next > heap->free || blk->next < (idx + blk- > >size) || (blk->next & (hheader->alignment - 1))) { > > blk->next = 0; /* cut off next block */ > > > > U gdk_qsort.mx > > Index: gdk_qsort.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_qsort.mx,v > > retrieving revision 1.34 > > retrieving revision 1.35 > > diff -u -d -r1.34 -r1.35 > > --- gdk_qsort.mx 7 Jan 2009 14:13:48 -0000 1.34 > > +++ gdk_qsort.mx 13 Apr 2009 23:36:24 -0000 1.35 > > @@ -86,6 +86,7 @@ > > char *offst; /* NULL or start of varsized heap */ > > int hshift; /* log2 of hs */ > > int tshift; /* log2 of hs */ > > + int vshift; /* shift to be applied on var_ offsets */ > > unsigned hs; /* width of head record */ > > unsigned ts; /* width of tail record */ > > void *h; /* start of head buns */ > > @@ -189,7 +190,7 @@ > > #endif > > #endif > > > > -#define offset(p) (buf->offst + *(var_t*) (p)) > > +#define offset(p) (buf->offst + ((*(var_t*) (p)) << buf- > >vshift)) > > #define direct(p) (p) > > > > #define any_LE(a,b) ((buf->cmp)(a,b) <= 0) > > @@ -432,6 +433,7 @@ > > buf.ts = (unsigned) ts; > > buf.hshift = ATOMelmshift(hs); > > buf.tshift = ATOMelmshift(ts); > > + buf.vshift = ATOMvarsized(tpe)?GDK_VARSHIFT:0; > > buf.h = h; > > if (!t) > > t = &x; > > > > U gdk_bat.mx > > Index: gdk_bat.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_bat.mx,v > > retrieving revision 1.214 > > retrieving revision 1.215 > > diff -u -d -r1.214 -r1.215 > > --- gdk_bat.mx 3 Apr 2009 09:14:52 -0000 1.214 > > +++ gdk_bat.mx 13 Apr 2009 23:36:24 -0000 1.215 > > @@ -434,7 +434,7 @@ > > BAT * > > BATextend(BAT *b, BUN newcap) > > { > > - size_t hheap_size, theap_size; > > + size_t hheap_size = newcap, theap_size = newcap; > > > > assert(newcap <= BUN_MAX); > > BATcheck(b, "BATextend"); > > @@ -453,10 +453,10 @@ > > > > b->batCapacity = newcap; > > > > - hheap_size = Hsize(b) * newcap; > > + hheap_size *= Hsize(b); > > if (b->H->heap.base && HEAPextend(&b->H->heap, hheap_size) < 0) > > return NULL; > > - theap_size = Tsize(b) * newcap; > > + theap_size *= Tsize(b); > > if (b->T->heap.base && HEAPextend(&b->T->heap, theap_size) < 0) > > return NULL; > > HASHdestroy(b); > > > > U gdk_ssort.mx > > Index: gdk_ssort.mx > > =================================================================== > > RCS file: /cvsroot/monetdb/MonetDB/src/gdk/gdk_ssort.mx,v > > retrieving revision 1.15 > > retrieving revision 1.16 > > diff -u -d -r1.15 -r1.16 > > --- gdk_ssort.mx 7 Jan 2009 14:13:48 -0000 1.15 > > +++ gdk_ssort.mx 13 Apr 2009 23:36:24 -0000 1.16 > > @@ -203,8 +203,8 @@ > > } \ > > } while (0) > > > > -#define ISLT_any(X, Y, ms) (((ms)->heap ? (*(ms)->compare)((ms)->heap + > * (var_t *) (X), (ms)->heap + * (var_t *) (Y)) : (*(ms)->compare)((X), > (Y))) < 0) > > -#define ISLT_any_rev(X, Y, ms) (((ms)->heap ? (*(ms)->compare)((ms)- > >heap + * (var_t *) (X), (ms)->heap + * (var_t *) (Y)) : (*(ms)- > >compare)((X), (Y))) > 0) > > +#define ISLT_any(X, Y, ms) (((ms)->heap ? (*(ms)->compare)((ms)->heap + > ((*(var_t*) (X)) << GDK_VARSHIFT), (ms)->heap + ((*(var_t*) (Y)) << > GDK_VARSHIFT)) : (*(ms)->compare)((X), (Y))) < 0) > > +#define ISLT_any_rev(X, Y, ms) (((ms)->heap ? (*(ms)->compare)((ms)- > >heap + ((*(var_t*) (X)) << GDK_VARSHIFT), (ms)->heap + ((*(var_t*) (Y)) << > GDK_VARSHIFT)) : (*(ms)->compare)((X), (Y))) > 0) > > @= islt > > #define ISLT_@1@2(X, Y, ms) (* (@1 *) (X) @3 * (@1 *) (Y)) > > > > > > > > ------------------------------------------------------------------------- > ----- > > This SF.net email is sponsored by: > > High Quality Requirements in a Collaborative Environment. > > Download a free trial of Rational Requirements Composer Now! > > http://p.sf.net/sfu/www-ibm-com > > _______________________________________________ > > Monetdb-checkins mailing list > > Monetdb-checkins@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/monetdb-checkins > > > -- > Sjoerd Mullender > > > No virus found in this incoming message. > Checked by AVG - www.avg.com > Version: 8.0.238 / Virus Database: 270.11.20/2013 - Release Date: 04/14/09 > 06:17:00