September 2017 - users-list

[MonetDB-users] Books CDs
by CHARTS LICENSING 11 Aug '24

11 Aug '24

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Multi-column update based on joined table
by Lee Hachadoorian 11 Aug '24

11 Aug '24

I need to update multiple columns (~250) from one table to another based on a two-column key. In Postgres I would write this using the FROM clause, but since MonetDB doesn't support the FROM clause, I've successfully updated one column with: UPDATE census.acs2010_5yr SET b07401001 = ( SELECT CAST(b07401001 AS int) FROM acs2010_5yr.tmp_seq0001 WHERE acs2010_5yr.stusab = tmp_seq0001.stusab AND acs2010_5yr.logrecno = tmp_seq0001.logrecno ); My question is whether there is any benefit to writing a multiple column update into a single UPDATE statement: UPDATE target_table SET column1 = (SELECT column1 FROM source_table WHERE target_table.key = source_table.key), column2 = (SELECT column2 FROM source_table WHERE target_table.key = source_table.key), ..., columnN = (SELECT columnN FROM source_table WHERE target_table.key = source_table.key); On Postgres I believe the multi-column update using a table join would only have to do the sequential scan of each table once, but with the necessity of sub-selects in MonetDB, what is the backend doing? Is it already doing an index scan once for each row in the single column case, then doing it once for each row * column in the multi-column case? Best, --Lee -- Lee Hachadoorian Asst Professor of Geography, Dartmouth College http://freecity.commons.gc.cuny.edu/

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[MonetDB-users] XQuery API and XLink/XUpdate support
by Alexandra Mart�nez 27 Jun '24

27 Jun '24

Hello all, I was wondering if there is any documentation about the API for XQuery (i.e., how to write xqueries from a Java program). Also, I am interested in using some features of XLink and XUpdate on top of my XML database. Is support for any of these in progress? Thanks in advance, Alexandra ______________________________________________________ Click here to donate to the Hurricane Katrina relief effort. http://store.yahoo.com/redcross-donate3/

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[MonetDB-users] Proofreading your professional documents
by Richard Hounslow 24 Feb '24

24 Feb '24

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DEC2016-SP2 and BINARY bulk load
by Lynn Carol Johnson 11 Jan '18

11 Jan '18

Hi all – I have always used the COPY BINARY INTO … commands to load my 2.0 Billion row genetic data into a monetdb table. With 135 columns, it has been blindingly fast. Last week I moved from the June2016-SP2 release to dec2016-SP2. My binary loads are taking WAY longer. I killed one after 3 hours (via “call sys.stop(pid)” so it could clean up properly). I then started the load again, thinking perhaps the problem was related to the new columns I was adding. I have since dropped the table and remade it using the same data and scripts that worked in just over 3 minutes in February on the jun2016-SP2 load. It is really chugging along – I’m up to 30 minutes and counting. I don’t have access to the sql log files, but the Merovingian.log shows nothing. I do notice that previously the binary files, once loaded, were removed from the loading directly. This does not happen now. Were these files previously “moved” and now they are copied? Has anyone see this performance issue with Dec2016-SP2 COPY BINARY INTO …. Commands? Thanks - Lynn

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MonetDB Blob Inserts
by Brian Hood 07 Dec '17

07 Dec '17

Hi Guys, I don't seem to be able to INSERT into a blob field is there any information how to achieve this. Regards, Brian Hood

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Setting Up Tools
by Sandy 26 Oct '17

26 Oct '17

Just getting back into trying MonetDB after many years. Got the environment set up pretty well with the test DB `VOC` loaded up and able to do all expected in the command line tools. So I figured I would give a couple of the mentioned GUI tools a shot and see how they work against the server I just set up on a virtual box. I picked up the JDBC drivers and installed on my Window's 10 install of SQuirrel SQL and DBeaver. I got both of the drivers works sort of... On DBeaver I can execute and see queries in the tool but can't do much more than that. Overall looks like an issue with accessing the system table `sys.environment`, not sure if anything related to set up or rights. Using the `voc` user as created with the example db in the getting started. Any help or thought on where to start? Thanks! Sandy -------- Errors * DBeaver 4.0.8 On inspection of some of the logs I see things like - `Error loading object metadata from database` `SQL Error [22000]: SELECT: access denied for voc to table 'sys.environment' java.sql.SQLException: SELECT: access denied for voc to table 'sys.environment'` * SQuirreL SQL Client 3.7.1 java.sql.SQLException: SELECT: access denied for voc to table 'sys.environment' -------- Driver and DB versions I'm using this JAR for the drivers - C:\Users\Squidward\Downloads\monetdb-jdbc-2.25.jar, 2.25 (Liberica 20170330 based on MCL v1.15) MonetDB version - MonetDB v11.25.23 (Dec2016-SP5), 'mapi:monetdb://sandy-VirtualBox-18:50000/voc'

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Problem in windows OS
by Amit Ambekar 23 Oct '17

23 Oct '17

Hi, I am using monetdb since long time with linux OS, i just tried it with Windows 7 OS. But in windows after shut down machine, database is crashing. I am not able to use any query in mclient now for that databases. What is problem ?

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make[9]: *** No rule to make target `../../../../sql/backends/monet5/lib_sql.la', needed by `lib_myudfname.la'. Stop.
by Anton Kravchenko 09 Oct '17

09 Oct '17

Hi there, I will try to map my issue to something that you are familiar with. For example "MonetDB-11.23.3/sql/backends/monet5/vaults" module. 1) It has Makefile.ag which has (among other lines): lib__vault = { MODULE DIR = libdir/monetdb5 SOURCES = vault.c LIBS = ../../../../monetdb5/tools/libmonetdb5 \ ../../../../gdk/libbat $(curl_LIBS) } And that means that "libmonetdb.la" has to be created before "vaults" is built. 2) Let's say I have added "../../../../sql/backends/monet5/lib_sql" dependency lib__vault = { MODULE DIR = libdir/monetdb5 SOURCES = vault.c LIBS = ../../../../monetdb5/tools/libmonetdb5 \ * ../../../../sql/backends/monet5/lib_sql \* ../../../../gdk/libbat $(curl_LIBS) } As you can see "vaults" is leaving inside "MonetDB-11.23.3/sql/backends/monet5" directory. 3) Now my question is: How can one propagate into MonetDB-11.23.3/sql/backends/monet5/Makefile.am that "lib_sql.la" has to be created before "vaults" is built? p.s. On Windows, there is MonetDB-11.23.3/sql/backends/monet5/Makefile.msc used (instead Makefile.am). And I would just change order in "all-recursive all-msc" to "all-msc all-recursive": # build-all: $(BUILT_SOURCES) all-recursive all-msc build-all: $(BUILT_SOURCES) all-msc all-recursive Thank you, Anton

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build error MonetDBv11.27.5 on Linux
by Anton Kravchenko 19 Sep '17

19 Sep '17

Hi there, I am able to build and install MonetDB v11.21.19 "Jul2015-SP4" by following and example from https://www.monetdb.org/wiki/MonetDB:Building_from_sources But when I try build MonetDB v11.27.5 on same machine I get this error (for a full log info see https://drive.google.com/drive/folders/0B7dMycp0Ku-NTlRsZW95R0xCNmM?usp=sha… ): /bin/sh ../../../../../libtool --tag=CC --mode=link gcc -DLIBPYAPI -g -O2 -D_REENTRANT -module -avoid-version -o lib_pyapi.la -rpath /home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/lib/monetdb5 lib_pyapi_la-pyapi.lo lib_pyapi_la-unicode.lo lib_pyapi_la-pytypes.lo lib_pyapi_la-type_conversion.lo lib_pyapi_la-formatinput.lo lib_pyapi_la-connection.lo lib_pyapi_la-pyloader.lo lib_pyapi_la-emit.lo lib_pyapi_la-conversion.lo ../../../../../monetdb5/tools/libmonetdb5.la ../../../../../gdk/libbat.la -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic libtool: link: gcc -shared -fPIC -DPIC .libs/lib_pyapi_la-pyapi.o .libs/lib_pyapi_la-unicode.o .libs/lib_pyapi_la-pytypes.o .libs/lib_pyapi_la-type_conversion.o .libs/lib_pyapi_la-formatinput.o .libs/lib_pyapi_la-connection.o .libs/lib_pyapi_la-pyloader.o .libs/lib_pyapi_la-emit.o .libs/lib_pyapi_la-conversion.o -Wl,-rpath -Wl,/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/monetdb5/tools/.libs -Wl,-rpath -Wl,/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/gdk/.libs -Wl,-rpath -Wl,/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/clients/mapilib/.libs -Wl,-rpath -Wl,/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/common/stream/.libs -Wl,-rpath -Wl,/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/lib -L/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/gdk/.libs -L/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/clients/mapilib/.libs -L/home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/common/stream/.libs ../../../../../monetdb5/tools/.libs/libmonetdb5.so /home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/gdk/.libs/libbat.so /home/SECDEV.LOCAL/akravchenko/MonetDB-Jul2017-SP1/BUILD/ clients/mapilib/.libs/libmapi.so -lpcre -lxml2 ../../../../../gdk/.libs/libbat.so /home/SECDEV.LOCAL/akravchenko /MonetDB-Jul2017-SP1/BUILD/common/stream/.libs/libstream.so -lsnappy -lssl -lcrypto -lz -lpython2.7 -lpthread -ldl -lutil -lm -g -O2 -Wl,-export-dynamic -pthread -Wl,-soname -Wl,lib_pyapi.so -o .libs/lib_pyapi.so /usr/bin/ld: cannot find -lpython2.7 collect2: ld returned 1 exit status make[11]: *** [lib_pyapi.la] Error 1 make[11]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5/UDF/pyapi' make[10]: *** [all] Error 2 make[10]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5/UDF/pyapi' make[9]: *** [all-recursive] Error 1 make[9]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5/UDF' make[8]: *** [all] Error 2 make[8]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5/UDF' make[7]: *** [all-recursive] Error 1 make[7]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5' make[6]: *** [all] Error 2 make[6]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends/monet5' make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends' make[4]: *** [all] Error 2 make[4]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql/backends' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql' make[2]: *** [all] Error 2 make[2]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD/sql' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/SECDEV.LOCAL/akravchenk o/MonetDB-Jul2017-SP1/BUILD' make: *** [all] Error 2 Thank you, Anton

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