Re: [MonetDB-users] Compile problems (CVS, Ubuntu 7.04)

27 May 2007


      OK first problem: installing to a custom directory so had to set up
environment variables. The documentation says set PYTHONPATH to
PREFIX/lib/python2.X (2.5 in my case). I do this and it doesn't work
(can't find package autogen). It actually needs to be set to
PREFIX/lib/python2.X/site-packages. Then it works.

R.

On 5/26/07, Stefan Manegold  wrote:
...
Ramon,
once you have time and bandwidth, could you please first remove any remains
of MonetDB (sources, builddirs, anything installed in you chosen prefix of
buildtools, MonetDB, clinerts, MonetDB4, pathfinder, etc.),
and then try from scratch, again, the way you prefer to install MonetDB.
Stop as soon as the first problem occurs (if any ;-)) and report it here.
Unfortunaltely, we do not have (access to) any Debian and/or Ubuntu
(anymore), hence, we cannot provide any .deb packages.
Kind regards,
Stefan
On Sat, May 26, 2007 at 10:24:55AM +0200, Ramon Nogueira wrote:
...
Yup, first I tried installing from the "Super Source Tarball"; then
from `alien'ed rpm; then individual tarballs; the install script; then
CVS! The problem with the install script is that it downloads things
afresh each time and I really can't afford that (I am in South Africa
where unfortunately, we still need to think about bandwidth). Here is
the (different) error I get when I try to compile the pathfinder
source tarball from sourceforge (against CVS components):
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I/usr/local/include/MonetDB
-I/usr/local/include/MonetDB/common -I/usr/local/include/MonetDB/gdk
-I/usr/local/include/MonetDB4 -I/usr/local/include/MonetDB4/monet
-I/usr/local/include/MonetDB4/plain
-I/usr/local/include/MonetDB4/contrib
-I/usr/local/include/MonetDB4/mapi
-I/usr/local/include/MonetDB4/calibrator -I/usr/include/libxml2
-I../compiler/include -I./../compiler/include -DLIBPATHFINDER -O2
-std=c99 -O6 -fomit-frame-pointer -finline-functions -falign-loops=4
-falign-jumps=4 -falign-functions=4 -fexpensive-optimizations
-funroll-loops -frerun-cse-after-loop -frerun-loop-opt
-Wno-declaration-after-statement -DEMBEDDED -DMT -DNO_CGI -DNO_AUTH
-DIO_MAX=10240 -c pathfinder.c  -fPIC -DPIC -o
.libs/lib_pathfinder_la-pathfinder.o
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:
In function 'xquery_function_call':
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:3980:
error: expected ')' before 'LLFMT'
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5417:34:
error: macro "MT_init_lock" requires 2 arguments, but only 1 given
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:
In function 'xquery_prelude':
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5417:
error: 'MT_init_lock' undeclared (first use in this function)
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5417:
error: (Each undeclared identifier is reported only once
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5417:
error: for each function it appears in.)
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5418:32:
error: macro "MT_init_lock" requires 2 arguments, but only 1 given
/export/scratch0/monet/monet.GNU.64.64.d.14791/pathfinder/runtime/pathfinder.mx:5419:31:
error: macro "MT_init_lock" requires 2 arguments, but only 1 given
make[4]: *** [lib_pathfinder_la-pathfinder.lo] Error 1
make[4]: Leaving directory
`/home/ramon/software/monetdb/pathfinder-0.16.2/runtime'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`/home/ramon/software/monetdb/pathfinder-0.16.2/runtime'
make[2]: *** [all] Error 2
make[2]: Leaving directory
`/home/ramon/software/monetdb/pathfinder-0.16.2/runtime'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/ramon/software/monetdb/pathfinder-0.16.2'
make: *** [all] Error 2
On 5/26/07, Stefan Manegold  wrote:
...
Hi Ramon,
On Sat, May 26, 2007 at 08:37:26AM +0200, Ramon Nogueira wrote:
...
Thanks for such a rapid response!
welcome --- you were just "lucky" ;-)
...
I checked out the source from CVS (including buildtools, I forgot to
mention that) with the following command:
cvs -d:pserver:anonymous@monetdb.cvs.sourceforge.net:/cvsroot/monetdb
checkout (buildtools|MonetDB|MonetDB4|pathfinder}.
looks good (well, I'm sure you also included clients, as you mentioned in
your first email).
...
I'm not too savvy wrt CVS, so not sure if this represents the latest code.
It is --- well, provided SourceForge does not run the anonymous pserver
access on backup server that run behind (again), but even then the
conpilation should work fine ...
...
For calling configure, I did not specify any other command line
parameters (just ./configure). I created separate build directories
build/MonetDB, build/pathfinder... and issued the ./configure and make
commands in those directories after doing ./bootstrap in the source
directories. I also tries following the instructions in the file
pathfinder/INSTALL which instructed me to do the configure/make in the
same directory as the source with the same error.
sounds just right --- hence, I'm puzzled; I have no idea, yet(?), what
causes this problem (i.e., where the bogus path
/export/scratch1/monet/monet.GNU.32.32.d.14791/MonetDB/.GNU.32.32.d-Fedora6/
come from...
Do you by any chance have a previous source (CVS or tarball) or binary (RPM)
installation of MonetDB on your machine? Possibly even the remains of an
uncomplete/aborted/failed RPM installation?
Stefan
...
On 5/26/07, Stefan Manegold  wrote:
...
Hi Ramon,
thank you very much for using MonetDB, and sorry for the inconvenience with
compiling pathfinder.
The error looks indeed strange. Actually it make me wonder whether you
indeed (try to) compile the CVS code base (and if so which one, the latest
HEAD or some release branch?) or whether you are using the source tarballs?
Of course, `bootstrap` is only required for the CVS version, but you do not
mention buildtools, which is also required (only) for the CVS version.
The requested but not found path
(/export/scratch1/monet/monet.GNU.32.32.d.14791/MonetDB/.GNU.32.32.d-Fedora6/lib/libbat.la)
is (as far as I can see) not contained in our CVS source base (except from
some testing stable output), but *might* be in the source tarballs (though
it should be ignored there.
To analyse the problem further could you please send us the complete
commandlines of you `configure` call for buildtools, MonetDB, clients,
MonetDB4 & pathfinder?
Kind regards
Stefan
On Sat, May 26, 2007 at 07:58:05AM +0200, Ramon Nogueira wrote:
...
Hi,
Trying to install MonetDB4 and pathfinder from CVS. I succeeded in
compiling and installing (into /usr/local) MonetDB, client and
MonetDB4 modules. `bootstrap' and `configure' both succeed from
pathfinder, but `make' produces the following error. Also, on another
note, I think it should be made clearer that installation of `client'
is a prerequisite for MonetDB4 server since this is quite a
counterintuitive order of dependency (server on client). I am on Linux
2.6.20-15-generic i686 GNU/Linux.
Output from `make':
---------------------------------------------------------------------------
(cd .libs && rm -f libpf.la && ln -s ../libpf.la libpf.la)
/bin/bash ../libtool --tag=CC   --mode=link gcc -DLIBPF_SUPPORT  -g
-O2 -Wall -Wextra -std=c99 -Werror-implicit-function-declaration
-Werror -Wpointer-arith -Wdeclaration-after-statement
-Wno-declaration-after-statement -DEMBEDDED -DMT -DNO_CGI -DNO_AUTH
-DIO_MAX=10240   -o lib_pf_support.la -rpath
/usr/local/lib/MonetDB4/lib  lib_pf_support_la-pf_support.glue.lo
lib_pf_support_la-pf_support.lo lib_pf_support_la-staircasejoin.lo
lib_pf_support_la-prec_foll.lo lib_pf_support_la-shredder.lo
libserialize.la libpf.la -lxml2 -L/usr/lib -lxml2 -ldl
-L/usr/local/lib -lbat -lstream -L/usr/local/lib -lmonet -lpthread
-L/usr/local/lib/MonetDB4/lib -l_lock -l_monettime -l_streams
-l_builtin -l_ascii_io -l_algebra -l_constant
gcc -shared  .libs/lib_pf_support_la-pf_support.glue.o
.libs/lib_pf_support_la-pf_support.o
.libs/lib_pf_support_la-staircasejoin.o
.libs/lib_pf_support_la-prec_foll.o .libs/lib_pf_support_la-shredder.o
-Wl,--whole-archive ./.libs/libserialize.a ./.libs/libpf.a
-Wl,--no-whole-archive  -Wl,--rpath -Wl,/usr/local/lib/MonetDB4/lib
-Wl,--rpath -Wl,/usr/local/lib/MonetDB4/lib -L/usr/lib
/usr/lib/libxml2.so -ldl -L/usr/local/lib /usr/lib/libbat.so
/usr/lib/libstream.so /usr/lib/libmonet.so -lpthread
-L/usr/local/lib/MonetDB4/lib /usr/local/lib/MonetDB4/lib/lib_lock.so
/usr/local/lib/MonetDB4/lib/lib_monettime.so
/usr/local/lib/MonetDB4/lib/lib_streams.so
/usr/local/lib/MonetDB4/lib/lib_builtin.so
/usr/local/lib/MonetDB4/lib/lib_ascii_io.so
/usr/local/lib/MonetDB4/lib/lib_algebra.so
/usr/local/lib/MonetDB4/lib/lib_constant.so  -Wl,-soname
-Wl,lib_pf_support.so.0 -o .libs/lib_pf_support.so.0.0.0
(cd .libs && rm -f lib_pf_support.so.0 && ln -s
lib_pf_support.so.0.0.0 lib_pf_support.so.0)
(cd .libs && rm -f lib_pf_support.so && ln -s lib_pf_support.so.0.0.0
lib_pf_support.so)
creating lib_pf_support.la
/bin/sed: can't read
/export/scratch1/monet/monet.GNU.32.32.d.14791/MonetDB/.GNU.32.32.d-Fedora6/lib/libbat.la:
No such file or directory
libtool: link: `/export/scratch1/monet/monet.GNU.32.32.d.14791/MonetDB/.GNU.32.32.d-Fedora6/lib/libbat.la'
is not a valid libtool archive
make[2]: *** [lib_pf_support.la] Error 1
make[2]: *** Deleting file `lib_pf_support.la'
make[2]: Leaving directory `/home/ramon/software/monetdb/cvs/pathfinder/runtime'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/ramon/software/monetdb/cvs/pathfinder'
make: *** [all] Error 2
-----------------------------------------------------------------------------
Your help is greatly appreciated.
Ramon Nogueira
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| CWI,  P.O.Box 94079 | http://www.cwi.nl/~manegold/  |
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--
| Dr. Stefan Manegold | mailto:Stefan.Manegold@cwi.nl |
| CWI,  P.O.Box 94079 | http://www.cwi.nl/~manegold/  |
| 1090 GB Amsterdam   | Tel.: +31 (20) 592-4212       |
| The Netherlands     | Fax : +31 (20) 592-4312       |
-------------------------------------------------------------------------
This SF.net email is sponsored by DB2 Express
Download DB2 Express C - the FREE version of DB2 express and take
control of your XML. No limits. Just data. Click to get it now.
http://sourceforge.net/powerbar/db2/
_______________________________________________
MonetDB-users mailing list
MonetDB-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/monetdb-users
--
| Dr. Stefan Manegold | mailto:Stefan.Manegold@cwi.nl |
| CWI,  P.O.Box 94079 | http://www.cwi.nl/~manegold/  |
| 1090 GB Amsterdam   | Tel.: +31 (20) 592-4212       |
| The Netherlands     | Fax : +31 (20) 592-4312       |