Re: Announcement: New Jan2014-SP2 Bugfix release of MonetDB suite

2 Jun 2014

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In file gdk/gdk_private.h remove
__attribute__((__visibility__("hidden"))) from the declaration of
MT_global_exit.  This very much reeks like a compiler bug.

Also, make sure that you compile without geom (configure
- --disable-geom), but that is a separate issue.

On 2014-06-02 16:13, Ashish Kumar Singh wrote:
...
Hi ,
[root@localhost ~]# gcc --version gcc (GCC) 4.1.2 20080704 (Red Hat
4.1.2-54) Copyright (C) 2006 Free Software Foundation, Inc. This is
free software; see the source for copying conditions.  There is NO 
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
[root@localhost ~]#
Configure went just fine based on my experience, output I have
pasted below for your reference:
MonetDB is configured as follows: * Compilation specifics: Host:
x86_64-unknown-linux-gnu Compiler:  gcc CFLAGS:    -g -O2
$(X_CFLAGS) X_CFLAGS: LDFLAGS:
* Enabled/disabled build options: strict     is disabled (by
default) assert     is disabled (by default) debug      is disabled
(by default) optimize   is disabled (by default) developer  is
disabled (by default) instrument is disabled (by default) profile
is disabled (by default)
* Enabled/disabled components: gdk       is enabled monetdb5  is
enabled sql       is enabled jaql      is disabled (MonetDB/JAQL
requires bison >= 2.4) geom      is disabled (geos library required
for geom module) gsl       is disabled (gsl library not found) fits
is disabled (cfitsio library not found) rdf       is disabled (by
default) datacell  is disabled (by default) odbc      is disabled
(unixODBC library required for ODBC driver) jdbc      is enabled 
control   is enabled testing   is enabled
* Available features/extensions: atomic_ops    = no  (atomic_ops
library not found) bz2           = no  (bz2 library not found) 
cfitsio       = no  (cfitsio library not found) curl          = no
(libcurl not found) geos          = no  (geos-config not found) 
getaddrinfo   = yes gsl           = no  (gsl library not found) 
hwcounters    = no  (no supported harwdware counters interface
found) java          = yes java_control  = yes java_jdbc     = yes 
libxml2       = yes mseed         = no  (libmseed.h header not
found) openssl       = yes pcre          = yes perl          = yes 
pthread       = yes python2       = yes python3       = no  (Python
3 executable not found) raptor        = no  (by default) readline
= yes rubygem       = no  (no rubygem executable found) setsockopt
= no  (by default) sphinxclient  = no  (sphinxclient.h header not
found) unixodbc      = no  (odbcinst.h not found) valgrind      =
no  (by default) winsock2      = yes zlib          = yes
* Important options: OID size:  64 bits
[root@localhost MonetDB-11.17.17]#
Regards, Ashish
On 02/06/14 7:38 pm, "Stefan Manegold" 
wrote:
...
Which version of gcc are you using (gcc --version)?
Did configure give any errors, warnings or other "unexpected"
output?
Stefan
----- Original Message -----
...
Hi,
How did you get the sources?  tar ball or Mercurial clone?
Ans: Tar ball
How did you run configure? Configure with no arguments Did you
make sure you did a completely clean build? I created a fresh
Cent OS 5.10 system, installed dependencies like libxml2,
openssl devel packages and tried building it .
Please note that previous version of monetdb just works fine in
this setup but this new SP2 version is failing.
we tried with CentOS 6.2 with same process and was able to
build successfully, Does below gives some hint on what is the
root cause? Gcc version in this case is different.
https://gcc.gnu.org/bugzilla/show_bug.cgi?id=30153
Please let me know what info we can provide you to find the
root cause? I am OK to create a VM Ware VM snapshot and upload
it for you if it helps.
Regards, Ashish
On 02/06/14 7:06 pm, "Sjoerd Mullender" 
wrote:
How did you get the sources?  tar ball or Mercurial clone? How did
you run configure? Did you make sure you did a completely clean
build?
On 2014-06-02 14:14, Ashish Kumar Singh wrote:
...
...
...
...
...
I am trying to compile on a vanilla CentOS 5.10 64 Bit
machine.
Regards, Ashish
On 02/06/14 4:03 pm, "Sjoerd Mullender" 
wrote:
We compile on a daily basis and haven't seen this error.
First make sure that you are recompiling everything.  If
that doesn't help, what configure options are you using,
and on what kind of system are you trying to compile?
On 2014-06-02 11:36, Ashish Kumar Singh wrote:
>>> Hi,
>>> 
>>> We are trying to compile this version of Monetdb
>>> but getting error below:
>>> 
>>> 
>>> libtool: link: gcc -shared  -fPIC -DPIC 
>>> .libs/libbat_la-gdk_batop.o
>>> .libs/libbat_la-gdk_select.o 
>>> .libs/libbat_la-gdk_select_legacy.o 
>>> .libs/libbat_la-gdk_search.o
>>> .libs/libbat_la-gdk_tm.o 
>>> .libs/libbat_la-gdk_align.o
>>> .libs/libbat_la-gdk_bbp.o 
>>> .libs/libbat_la-gdk_heap.o
>>> .libs/libbat_la-gdk_setop.o 
>>> .libs/libbat_la-gdk_utils.o
>>> .libs/libbat_la-gdk_atoms.o 
>>> .libs/libbat_la-gdk_qsort.o
>>> .libs/libbat_la-gdk_ssort.o 
>>> .libs/libbat_la-gdk_storage.o
>>> .libs/libbat_la-gdk_bat.o 
>>> .libs/libbat_la-gdk_delta.o
>>> .libs/libbat_la-gdk_cross.o 
>>> .libs/libbat_la-gdk_system.o
>>> .libs/libbat_la-gdk_value.o 
>>> .libs/libbat_la-gdk_posix.o
>>> .libs/libbat_la-gdk_logger.o 
>>> .libs/libbat_la-gdk_sample.o
>>> .libs/libbat_la-gdk_calc.o 
>>> .libs/libbat_la-gdk_aggr.o
>>> .libs/libbat_la-gdk_group.o 
>>> .libs/libbat_la-gdk_mapreduce.o 
>>> .libs/libbat_la-gdk_imprints.o
>>> .libs/libbat_la-gdk_join.o 
>>> .libs/libbat_la-gdk_join_legacy.o
>>> -Wl,--whole-archive 
>>> ../common/options/.libs/libmoptions.a 
>>> ../common/utils/.libs/libmutils.a
>>> -Wl,--no-whole-archive -Wl,-rpath
>>> -Wl,/opt/MonetDB-11.17.17/common/stream/.libs 
>>> -Wl,-rpath -Wl,/usr/local/lib 
>>> ../common/stream/.libs/libstream.so
>>> -L/usr/kerberos/lib64 -lssl -lcrypto -lm -lz -ldl
>>> -O2 -pthread -pthread -Wl,-soname -Wl,libbat.so.10
>>> -o .libs/libbat.so.10.0.7 /usr/bin/ld:
>>> .libs/libbat_la-gdk_utils.o: relocation 
>>> R_X86_64_PC32 against `MT_global_exit' can not be
>>> used when making a shared object; recompile with
>>> -fPIC
>>> 
>>> Please note the version prior to this compiles just
>>> fine, anything we need to be aware of for compiling
>>> this???
>>> 
>>> 
>>> 
>>> Regards, Ashish
>>> 
>>> On 22/05/14 1:21 pm, "Sjoerd Mullender"
>>>  wrote:
>>> 
>>>> The MonetDB team at CWI/MonetDB BV is pleased to
>>>> announce the Jan2014-SP2 bugfix release of the
>>>> MonetDB suite of programs.
>>>> 
>>>> More information about MonetDB can be found on
>>>> our website at http://www.monetdb.org/.
>>>> 
>>>> For details on this release, please see the
>>>> release notes at
>>>> http://www.monetdb.org/Downloads/ReleaseNotes.
>>>> 
>>>> As usual, the download location is 
>>>> http://dev.monetdb.org/downloads/.
>>>> 
>>>> 
>>>> Jan 2014-SP2 bugfix release Build Environment *
>>>> Lots of minor fixes were made for potential
>>>> defects found by Coverity Scan. * On Windows we
>>>> now build the geom module against version 3.4.2
>>>> of the geos library.
>>>> 
>>>> Client Package * ODBC: Implemented {call 
>>>> procedure-name(...)} escape. The version {?=call
>>>> ...} is not implemented.
>>>> 
>>>> Bug Fixes * 3424: numeric values at the front of
>>>> strings determines whether CAST works
>>>> successfully * 3439: Python driver drops
>>>> milliseconds from timestamps * 3446: SET READ 
>>>> ONLY forgets previous changes * 3455: String
>>>> columns unusable from 64-bit .NET via ODBC *
>>>> 3456: Insert fails * 3457: When kernel of remote
>>>> client crashes, the connection remains
>>>> established on server side * 3458: mserver5
>>>> crash on SQL: SELECT COUNT(*) FROM SYS.TABLES
>>>> HAVING COUNT(*) > 0 * 3461: mserver5 crash on
>>>> SQL: SELECT * FROM SYS.ARGS WHERE FUNC_ID NOT IN
>>>> (SELECT ID FROM SYS.FUNCTIONS) OR FUNC_ID NOT IN
>>>> (SELECT * FROM SYS.FUNCTIONS) * 3462: Invalid
>>>> SQL (IN with subquery which returns multiple
>>>> columns) is accepted * 3463: Crash on SELECT with
>>>> SERIAL aggregation and GROUP BY column alias's *
>>>> 3468: Local temporary table persists across
>>>> sessions * 3469: Absolute network paths 
>>>> considered invalid for COPY INTO ... FROM
>>>> statement. * 3473: Various memory leaks in SQL
>>>> compilation * 3477: ODBC driver raises
>>>> "unexpected end of input" for prepared string 
>>>> parameter from .NET application * 3481: Cannot
>>>> run multiple COPY INTO statements in one
>>>> 's'-command * 3482: Crossproduct error 
>>>> _______________________________________________ 
>>>> announce-list mailing list
>>>> announce-list@monetdb.org 
>>>> https://www.monetdb.org/mailman/listinfo/announce-list
>>>
>>>
>>>> 
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>>> https://www.monetdb.org/mailman/listinfo/users-list
>>>
>
>>> 
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...
...
...
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-- | Stefan.Manegold@CWI.nl | DB Architectures   (DA) | |
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Sjoerd Mullender
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