[MonetDB-users] MALException:MAL.getAddress:address of 'bat.BKChasReadMode' not found
I am trying to do a straight install of Monet's latest SuperBall (SP!) on Centos 5 (64 bits) and so here is the prologue to the build log: called with arguments: --enable-sql --enable-optimise --prefix=/var/tmp/TEST Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB-client to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB5-server to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB-SQL to /var/tmp/MonetDB-1231879854 * Processing MonetDB ./configure --prefix='/var/tmp/TEST' --enable-optimize --disable-debug --disable-assert --disable-strict --with-python-libdir=lib64/python2.5 --with-p ython-library=/usr/local/lib64/ --with-python-incdir=/usr/local/include/python2.5 The process completes and installs, but when merovingian tries to start a database, it logs this: MSG merovingian[17999]: refresh from mork.denhamcapital.corp for database TEST2 MSG merovingian[17999]: refresh from mork.denhamcapital.corp for database TEST MSG merovingian[17999]: starting database TEST due to control signal MSG TEST[18007]: executing '/usr/local/bin/mserver5' for database 'TEST' MSG merovingian[17999]: starting database 'TEST', up min/avg/max: 10/10/10, crash average: 0.00 0.00 0.00 (2-2=0) MSG TEST[18007]: # MonetDB server v5.8.0, based on kernel v1.26.0 MSG TEST[18007]: # Serving database 'TEST', using 8 threads MSG TEST[18007]: # Compiled for x86_64-unknown-linux-gnu/64bit with 64bit OIDs statically linked MSG TEST[18007]: # Copyright (c) 1993-July 2008 CWI. MSG TEST[18007]: # Copyright (c) August 2008- MonetDB B.V., all rights reserved MSG TEST[18007]: # Visit http://monetdb.cwi.nl/ for further information MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mdb: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bat5: loader error /usr/local/lib/MonetDB5/lib/lib_bat5.so: undefined symbol: BATconvert MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:batExtensions: loader error lib_bat5.so.0: cannot open shared object file: No such file or dire ctory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:algebraExtensions: loader error lib_xml.so.0: cannot open shared object file: No such file or d irectory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:pqueue: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:factory: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:const: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bbp: loader error lib_bat5.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:box: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mat: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bpm: loader error lib_bat5.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:inspect: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:manual: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:language: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:constraints: loader error lib_xml.so.0: cannot open shared object file: No such file or directo ry MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mal_mapi: loader error /usr/local/lib/MonetDB5/lib/lib_mal_mapi.so: undefined symbol: ssl_rastr eam (and so on). I've tried both November and Novermber-SP1, with and without xquery, in misceleaneous and sundry combinations, and I wonder if it's a lib64 vesus lib issue, or whether mserver5/Mserver are failing to find some MAL files as well as thse so's. They have wound up in strange places like /usr/local/lib/MonetDB5/lib/lib_xml.so. What's the best way to tidy up this situation ? Denham Quantitative Management LP 200 Clarendon Street, 25th Floor Boston, MA 02216 T: 617-587-5812 M: 617-909-7786 omri.schwarz@denhamcapital.com NOTICE: This e-mail message is intended for the named recipient(s) above and may contain confidential information. If you are not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this e-mail and any attachment(s) is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender by replying to this e-mail and delete the message and any attachment(s) from your system. NO REPRESENTATION OR WARRANTY IS MADE TO ANY PERSON AS TO THE ACCURACY OR COMPLETENESS OF THE INFORMATION CONTAINED HEREIN. Denham Capital Management(sm) is a trademark of Denham Capital Management LP.
My first guess is that you're missing the libxml2 library. This library is used by the lib_xml file that fails to load. When building the system, configure checks whether the library is there, and when it isn't, it skips building lib_xml. It seems it still tries to load that library (this looks like a bug to me). So, make sure you have libxml2 (with development files) installed. You can check the build logs to see whether the library was found. Schwarz, Omri wrote:
I am trying to do a straight install of Monet's latest SuperBall (SP!) on Centos 5 (64 bits) and so here is the prologue to the build log:
called with arguments: --enable-sql --enable-optimise --prefix=/var/tmp/TEST Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB-client to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB5-server to /var/tmp/MonetDB-1231879854 Copying /root/MonetDB-Nov2008-SuperBall-SP1/MonetDB-SQL to /var/tmp/MonetDB-1231879854 * Processing MonetDB ./configure --prefix='/var/tmp/TEST' --enable-optimize --disable-debug --disable-assert --disable-strict --with-python-libdir=lib64/python2.5 --with-p ython-library=/usr/local/lib64/ --with-python-incdir=/usr/local/include/python2.5
The process completes and installs, but when merovingian tries to start a database, it logs this:
MSG merovingian[17999]: refresh from mork.denhamcapital.corp for database TEST2 MSG merovingian[17999]: refresh from mork.denhamcapital.corp for database TEST MSG merovingian[17999]: starting database TEST due to control signal MSG TEST[18007]: executing '/usr/local/bin/mserver5' for database 'TEST' MSG merovingian[17999]: starting database 'TEST', up min/avg/max: 10/10/10, crash average: 0.00 0.00 0.00 (2-2=0) MSG TEST[18007]: # MonetDB server v5.8.0, based on kernel v1.26.0 MSG TEST[18007]: # Serving database 'TEST', using 8 threads MSG TEST[18007]: # Compiled for x86_64-unknown-linux-gnu/64bit with 64bit OIDs statically linked MSG TEST[18007]: # Copyright (c) 1993-July 2008 CWI. MSG TEST[18007]: # Copyright (c) August 2008- MonetDB B.V., all rights reserved MSG TEST[18007]: # Visit http://monetdb.cwi.nl/ for further information MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mdb: loader error lib_xml.so.0: cannot open shared object file: No such file or directory
MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bat5: loader error /usr/local/lib/MonetDB5/lib/lib_bat5.so: undefined symbol: BATconvert MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:batExtensions: loader error lib_bat5.so.0: cannot open shared object file: No such file or dire ctory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:algebraExtensions: loader error lib_xml.so.0: cannot open shared object file: No such file or d irectory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:pqueue: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:factory: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:const: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bbp: loader error lib_bat5.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:box: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mat: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:bpm: loader error lib_bat5.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:inspect: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:manual: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:language: loader error lib_xml.so.0: cannot open shared object file: No such file or directory MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:constraints: loader error lib_xml.so.0: cannot open shared object file: No such file or directo ry MSG TEST[18007]: #WARNING: LoaderException:loadLibrary:mal_mapi: loader error /usr/local/lib/MonetDB5/lib/lib_mal_mapi.so: undefined symbol: ssl_rastr eam (and so on).
I've tried both November and Novermber-SP1, with and without xquery, in misceleaneous and sundry combinations, and I wonder if it's a lib64 vesus lib issue, or whether mserver5/Mserver are failing to find some MAL files as well as thse so's. They have wound up in strange places like /usr/local/lib/MonetDB5/lib/lib_xml.so.
What's the best way to tidy up this situation ?
*Denham Quantitative Management LP* 200 Clarendon Street, 25th Floor Boston, MA 02216 T: 617-587-5812 M: 617-909-7786 omri.schwarz@denhamcapital.com
NOTICE: This e-mail message is intended for the named recipient(s) above and may contain confidential information. If you are not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this e-mail and any attachment(s) is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender by replying to this e-mail and delete the message and any attachment(s) from your system. NO REPRESENTATION OR WARRANTY IS MADE TO ANY PERSON AS TO THE ACCURACY OR COMPLETENESS OF THE INFORMATION CONTAINED HEREIN.
Denham Capital Management(sm) is a trademark of Denham Capital Management LP.
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Sjoerd Mullender